Philippe Thomas


2023

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Findings of the WMT 2023 Biomedical Translation Shared Task: Evaluation of ChatGPT 3.5 as a Comparison System
Mariana Neves | Antonio Jimeno Yepes | Aurélie Névéol | Rachel Bawden | Giorgio Maria Di Nunzio | Roland Roller | Philippe Thomas | Federica Vezzani | Maika Vicente Navarro | Lana Yeganova | Dina Wiemann | Cristian Grozea
Proceedings of the Eighth Conference on Machine Translation

We present an overview of the Biomedical Translation Task that was part of the Eighth Conference on Machine Translation (WMT23). The aim of the task was the automatic translation of biomedical abstracts from the PubMed database. It included twelve language directions, namely, French, Spanish, Portuguese, Italian, German, and Russian, from and into English. We received submissions from 18 systems and for all the test sets that we released. Our comparison system was based on ChatGPT 3.5 and performed very well in comparison to many of the submissions.

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MultiTACRED: A Multilingual Version of the TAC Relation Extraction Dataset
Leonhard Hennig | Philippe Thomas | Sebastian Möller
Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)

Relation extraction (RE) is a fundamental task in information extraction, whose extension to multilingual settings has been hindered by the lack of supervised resources comparable in size to large English datasets such as TACRED (Zhang et al., 2017). To address this gap, we introduce the MultiTACRED dataset, covering 12 typologically diverse languages from 9 language families, which is created by machine-translating TACRED instances and automatically projecting their entity annotations. We analyze translation and annotation projection quality, identify error categories, and experimentally evaluate fine-tuned pretrained mono- and multilingual language models in common transfer learning scenarios. Our analyses show that machine translation is a viable strategy to transfer RE instances, with native speakers judging more than 83% of the translated instances to be linguistically and semantically acceptable. We find monolingual RE model performance to be comparable to the English original for many of the target languages, and that multilingual models trained on a combination of English and target language data can outperform their monolingual counterparts. However, we also observe a variety of translation and annotation projection errors, both due to the MT systems and linguistic features of the target languages, such as pronoun-dropping, compounding and inflection, that degrade dataset quality and RE model performance.

2022

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Findings of the WMT 2022 Biomedical Translation Shared Task: Monolingual Clinical Case Reports
Mariana Neves | Antonio Jimeno Yepes | Amy Siu | Roland Roller | Philippe Thomas | Maika Vicente Navarro | Lana Yeganova | Dina Wiemann | Giorgio Maria Di Nunzio | Federica Vezzani | Christel Gerardin | Rachel Bawden | Darryl Johan Estrada | Salvador Lima-lopez | Eulalia Farre-maduel | Martin Krallinger | Cristian Grozea | Aurelie Neveol
Proceedings of the Seventh Conference on Machine Translation (WMT)

In the seventh edition of the WMT Biomedical Task, we addressed a total of seven languagepairs, namely English/German, English/French, English/Spanish, English/Portuguese, English/Chinese, English/Russian, English/Italian. This year’s test sets covered three types of biomedical text genre. In addition to scientific abstracts and terminology items used in previous editions, we released test sets of clinical cases. The evaluation of clinical cases translations were given special attention by involving clinicians in the preparation of reference translations and manual evaluation. For the main MEDLINE test sets, we received a total of 609 submissions from 37 teams. For the ClinSpEn sub-task, we had the participation of five teams.

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Cross-lingual Approaches for the Detection of Adverse Drug Reactions in German from a Patient’s Perspective
Lisa Raithel | Philippe Thomas | Roland Roller | Oliver Sapina | Sebastian Möller | Pierre Zweigenbaum
Proceedings of the Thirteenth Language Resources and Evaluation Conference

In this work, we present the first corpus for German Adverse Drug Reaction (ADR) detection in patient-generated content. The data consists of 4,169 binary annotated documents from a German patient forum, where users talk about health issues and get advice from medical doctors. As is common in social media data in this domain, the class labels of the corpus are very imbalanced. This and a high topic imbalance make it a very challenging dataset, since often, the same symptom can have several causes and is not always related to a medication intake. We aim to encourage further multi-lingual efforts in the domain of ADR detection and provide preliminary experiments for binary classification using different methods of zero- and few-shot learning based on a multi-lingual model. When fine-tuning XLM-RoBERTa first on English patient forum data and then on the new German data, we achieve an F1-score of 37.52 for the positive class. We make the dataset and models publicly available for the community.

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MobASA: Corpus for Aspect-based Sentiment Analysis and Social Inclusion in the Mobility Domain
Aleksandra Gabryszak | Philippe Thomas
Proceedings of the First Computing Social Responsibility Workshop within the 13th Language Resources and Evaluation Conference

In this paper we show how aspect-based sentiment analysis might help public transport companies to improve their social responsibility for accessible travel. We present MobASA: a novel German-language corpus of tweets annotated with their relevance for public transportation, and with sentiment towards aspects related to barrier-free travel. We identified and labeled topics important for passengers limited in their mobility due to disability, age, or when travelling with young children. The data can be used to identify hurdles and improve travel planning for vulnerable passengers, as well as to monitor a perception of transportation businesses regarding the social inclusion of all passengers. The data is publicly available under: https://github.com/DFKI-NLP/sim3s-corpus

2021

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Findings of the WMT 2021 Biomedical Translation Shared Task: Summaries of Animal Experiments as New Test Set
Lana Yeganova | Dina Wiemann | Mariana Neves | Federica Vezzani | Amy Siu | Inigo Jauregi Unanue | Maite Oronoz | Nancy Mah | Aurélie Névéol | David Martinez | Rachel Bawden | Giorgio Maria Di Nunzio | Roland Roller | Philippe Thomas | Cristian Grozea | Olatz Perez-de-Viñaspre | Maika Vicente Navarro | Antonio Jimeno Yepes
Proceedings of the Sixth Conference on Machine Translation

In the sixth edition of the WMT Biomedical Task, we addressed a total of eight language pairs, namely English/German, English/French, English/Spanish, English/Portuguese, English/Chinese, English/Russian, English/Italian, and English/Basque. Further, our tests were composed of three types of textual test sets. New to this year, we released a test set of summaries of animal experiments, in addition to the test sets of scientific abstracts and terminologies. We received a total of 107 submissions from 15 teams from 6 countries.

2020

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Findings of the WMT 2020 Biomedical Translation Shared Task: Basque, Italian and Russian as New Additional Languages
Rachel Bawden | Giorgio Maria Di Nunzio | Cristian Grozea | Inigo Jauregi Unanue | Antonio Jimeno Yepes | Nancy Mah | David Martinez | Aurélie Névéol | Mariana Neves | Maite Oronoz | Olatz Perez-de-Viñaspre | Massimo Piccardi | Roland Roller | Amy Siu | Philippe Thomas | Federica Vezzani | Maika Vicente Navarro | Dina Wiemann | Lana Yeganova
Proceedings of the Fifth Conference on Machine Translation

Machine translation of scientific abstracts and terminologies has the potential to support health professionals and biomedical researchers in some of their activities. In the fifth edition of the WMT Biomedical Task, we addressed a total of eight language pairs. Five language pairs were previously addressed in past editions of the shared task, namely, English/German, English/French, English/Spanish, English/Portuguese, and English/Chinese. Three additional languages pairs were also introduced this year: English/Russian, English/Italian, and English/Basque. The task addressed the evaluation of both scientific abstracts (all language pairs) and terminologies (English/Basque only). We received submissions from a total of 20 teams. For recurring language pairs, we observed an improvement in the translations in terms of automatic scores and qualitative evaluations, compared to previous years.

2018

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Football and Beer - a Social Media Analysis on Twitter in Context of the FIFA Football World Cup 2018
Roland Roller | Philippe Thomas | Sven Schmeier
Proceedings of the 2018 EMNLP Workshop SMM4H: The 3rd Social Media Mining for Health Applications Workshop & Shared Task

In many societies alcohol is a legal and common recreational substance and socially accepted. Alcohol consumption often comes along with social events as it helps people to increase their sociability and to overcome their inhibitions. On the other hand we know that increased alcohol consumption can lead to serious health issues, such as cancer, cardiovascular diseases and diseases of the digestive system, to mention a few. This work examines alcohol consumption during the FIFA Football World Cup 2018, particularly the usage of alcohol related information on Twitter. For this we analyse the tweeting behaviour and show that the tournament strongly increases the interest in beer. Furthermore we show that countries who had to leave the tournament at early stage might have done something good to their fans as the interest in beer decreased again.

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A German Corpus for Fine-Grained Named Entity Recognition and Relation Extraction of Traffic and Industry Events
Martin Schiersch | Veselina Mironova | Maximilian Schmitt | Philippe Thomas | Aleksandra Gabryszak | Leonhard Hennig
Proceedings of the Eleventh International Conference on Language Resources and Evaluation (LREC 2018)

2017

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Findings of the WMT 2017 Biomedical Translation Shared Task
Antonio Jimeno Yepes | Aurélie Névéol | Mariana Neves | Karin Verspoor | Ondřej Bojar | Arthur Boyer | Cristian Grozea | Barry Haddow | Madeleine Kittner | Yvonne Lichtblau | Pavel Pecina | Roland Roller | Rudolf Rosa | Amy Siu | Philippe Thomas | Saskia Trescher
Proceedings of the Second Conference on Machine Translation

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Streaming Text Analytics for Real-Time Event Recognition
Philippe Thomas | Johannes Kirschnick | Leonhard Hennig | Renlong Ai | Sven Schmeier | Holmer Hemsen | Feiyu Xu | Hans Uszkoreit
Proceedings of the International Conference Recent Advances in Natural Language Processing, RANLP 2017

A huge body of continuously growing written knowledge is available on the web in the form of social media posts, RSS feeds, and news articles. Real-time information extraction from such high velocity, high volume text streams requires scalable, distributed natural language processing pipelines. We introduce such a system for fine-grained event recognition within the big data framework Flink, and demonstrate its capabilities for extracting and geo-locating mobility- and industry-related events from heterogeneous text sources. Performance analyses conducted on several large datasets show that our system achieves high throughput and maintains low latency, which is crucial when events need to be detected and acted upon in real-time. We also present promising experimental results for the event extraction component of our system, which recognizes a novel set of event types. The demo system is available at http://dfki.de/sd4m-sta-demo/.

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Common Round: Application of Language Technologies to Large-Scale Web Debates
Hans Uszkoreit | Aleksandra Gabryszak | Leonhard Hennig | Jörg Steffen | Renlong Ai | Stephan Busemann | Jon Dehdari | Josef van Genabith | Georg Heigold | Nils Rethmeier | Raphael Rubino | Sven Schmeier | Philippe Thomas | He Wang | Feiyu Xu
Proceedings of the Software Demonstrations of the 15th Conference of the European Chapter of the Association for Computational Linguistics

Web debates play an important role in enabling broad participation of constituencies in social, political and economic decision-taking. However, it is challenging to organize, structure, and navigate a vast number of diverse argumentations and comments collected from many participants over a long time period. In this paper we demonstrate Common Round, a next generation platform for large-scale web debates, which provides functions for eliciting the semantic content and structures from the contributions of participants. In particular, Common Round applies language technologies for the extraction of semantic essence from textual input, aggregation of the formulated opinions and arguments. The platform also provides a cross-lingual access to debates using machine translation.

2016

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Real-Time Discovery and Geospatial Visualization of Mobility and Industry Events from Large-Scale, Heterogeneous Data Streams
Leonhard Hennig | Philippe Thomas | Renlong Ai | Johannes Kirschnick | He Wang | Jakob Pannier | Nora Zimmermann | Sven Schmeier | Feiyu Xu | Jan Ostwald | Hans Uszkoreit
Proceedings of ACL-2016 System Demonstrations

2013

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WBI-DDI: Drug-Drug Interaction Extraction using Majority Voting
Philippe Thomas | Mariana Neves | Tim Rocktäschel | Ulf Leser
Second Joint Conference on Lexical and Computational Semantics (*SEM), Volume 2: Proceedings of the Seventh International Workshop on Semantic Evaluation (SemEval 2013)

2012

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Improving Distantly Supervised Extraction of Drug-Drug and Protein-Protein Interactions
Tamara Bobić | Roman Klinger | Philippe Thomas | Martin Hofmann-Apitius
Proceedings of the Joint Workshop on Unsupervised and Semi-Supervised Learning in NLP

2011

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Not all links are equal: Exploiting Dependency Types for the Extraction of Protein-Protein Interactions from Text
Philippe Thomas | Stefan Pietschmann | Illés Solt | Domonkos Tikk | Ulf Leser
Proceedings of BioNLP 2011 Workshop

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Learning Protein–Protein Interaction Extraction using Distant Supervision
Philippe Thomas | Illés Solt | Roman Klinger | Ulf Leser
Proceedings of Workshop on Robust Unsupervised and Semisupervised Methods in Natural Language Processing