Table of contents

Anthology Volume Year Papers
W15-38 Proceedings of BioNLP 15 2015 24
W12-24 BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing 2012 31


Pdf Export Search Proceedings of BioNLP 15


Pdf Export Search Proceedings of BioNLP 15
[W15-3800]: Kevin Bretonnel Cohen | Dina Demner-Fushman | Sophia Ananiadou | Jun-ichi Tsujii

Pdf Export Search Complex Event Extraction using DRUM
[W15-3801]: James Allen | Will de Beaumont | Lucian Galescu | Choh Man Teng

Pdf Export Search Making the most of limited training data using distant supervision
[W15-3802]: Roland Roller | Mark Stevenson

Pdf Export Search An extended dependency graph for relation extraction in biomedical texts
[W15-3803]: Yifan Peng | Samir Gupta | Cathy Wu | Vijay Shanker

Pdf Export Search Event Extraction in pieces:Tackling the partial event identification problem on unseen corpora
[W15-3804]: Chrysoula Zerva | Sophia Ananiadou

Pdf Export Search Extracting Biological Pathway Models From NLP Event Representations
[W15-3805]: Michael Spranger | Sucheendra Palaniappan | Samik Ghosh

Pdf Export Search Shallow Training is cheap but is it good enough? Experiments with Medical Fact Coding
[W15-3806]: Ramesh Nallapati | Radu Florian

Pdf Export Search Stacked Generalization for Medical Concept Extraction from Clinical Notes
[W15-3807]: Youngjun Kim | Ellen Riloff

Pdf Export Search Extracting Disease-Symptom Relationships by Learning Syntactic Patterns from Dependency Graphs
[W15-3808]: Mohsen Hassan | Olfa Makkaoui | Adrien Coulet | Yannick Toussain

Pdf Export Search Extracting Time Expressions from Clinical Text
[W15-3809]: Timothy Miller | Steven Bethard | Dmitriy Dligach | Chen Lin | Guergana Savova

Pdf Export Search Exploiting Task-Oriented Resources to Learn Word Embeddings for Clinical Abbreviation Expansion
[W15-3810]: Yue Liu | Tao Ge | Kusum Mathews | Heng Ji | Deborah McGuinness

Pdf Export Search Semantic Type Classification of Common Words in Biomedical Noun Phrases
[W15-3811]: Amy Siu | Gerhard Weikum

Pdf Export Search CoMAGD: Annotation of Gene-Depression Relations
[W15-3812]: Rize Jin | Jinseon You | Jin-Woo Chung | Hee-Jin Lee | Maria Wolters | Jong Park

Pdf Export Search Lexical Characteristics Analysis of Chinese Clinical Documents
[W15-3813]: Meizhi Ju | Haomin Li | Huilong Duan

Pdf Export Search Using word embedding for bio-event extraction
[W15-3814]: Chen Li | Runqing Song | Maria Liakata | Andreas Vlachos | Stephanie Seneff | Xiangrong Zhang

Pdf Export Search Measuring the readability of medical research journal abstracts
[W15-3815]: Samuel J. Severance | K. Bretonnel Cohen

Pdf Export Search Translating Electronic Health Record Notes from English to Spanish: A Preliminary Study
[W15-3816]: Weisong Liu | Shu Cai

Pdf Export Search Automatic Detection of Answers to Research Questions from Medline Abstracts
[W15-3817]: Abdulaziz Alamri | Mark Stevenson

Pdf Export Search A preliminary study on automatic identification of patient smoking status in unstructured electronic health records
[W15-3818]: Jitendra Jonnagaddala | Hong-Jie Dai | Pradeep Ray | Siaw-Teng Liaw

Pdf Export Search Restoring the intended structure of Hungarian ophthalmology documents
[W15-3819]: Borbála Siklósi | Attila Novák

Pdf Export Search Evaluating distributed word representations for capturing semantics of biomedical concepts
[W15-3820]: MUNEEB TH | Sunil Sahu | Ashish Anand

Pdf Export Search Investigating Public Health Surveillance using Twitter
[W15-3821]: Antonio Jimeno Yepes | Andrew MacKinlay | Bo Han

Pdf Export Search Clinical Abbreviation Disambiguation Using Neural Word Embeddings
[W15-3822]: yonghui wu | Jun Xu | Yaoyun Zhang | Hua Xu

Pdf Export Search Note Representing Clinical Diagnostic Criteria in Quality Data Model Using Natural Language Processing
[W15-3823]: Na Hong | Dingcheng Li | Yue Yu | Hongfang Liu | Christopher G. Chute | Guoqian Jiang



Pdf Export Search BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing


Pdf Export Search BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
[W12-2400]: Kevin B. Cohen | Dina Demner-Fushman | Sophia Ananiadou | Bonnie Webber | Jun'ichi Tsujii | John Pestian

Pdf Export Search Graph-based alignment of narratives for automated neurological assessment
[W12-2401]: Emily Prud'hommeaux | Brian Roark

Pdf Export Search Bootstrapping Biomedical Ontologies for Scientific Text using NELL
[W12-2402]: Dana Movshovitz-Attias | William W. Cohen

Pdf Export Search Semantic distance and terminology structuring methods for the detection of semantically close terms
[W12-2403]: Marie Dupuch | Laëtitia Dupuch | Thierry Hamon | Natalia Grabar

Pdf Export Search Temporal Classification of Medical Events
[W12-2404]: Preethi Raghavan | Eric Fosler-Lussier | Albert Lai

Pdf Export Search Analyzing Patient Records to Establish If and When a Patient Suffered from a Medical Condition
[W12-2405]: James Cogley | Nicola Stokes | Joe Carthy | John Dunnion

Pdf Export Search Alignment-HMM-based Extraction of Abbreviations from Biomedical Text
[W12-2406]: Dana Movshovitz-Attias | William W. Cohen

Pdf Export Search Medical diagnosis lost in translation – Analysis of uncertainty and negation expressions in English and Swedish clinical texts
[W12-2407]: Danielle L. Mowery | Sumithra Velupillai | Wendy W. Chapman

Pdf Export Search A Hybrid Stepwise Approach for De-identifying Person Names in Clinical Documents
[W12-2408]: Oscar Ferrandez | Brett South | Shuying Shen | Stephane Meystre

Pdf Export Search Active Learning for Coreference Resolution
[W12-2409]: Timothy Miller | Dmitriy Dligach | Guergana Savova

Pdf Export Search PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations
[W12-2410]: Jari Björne | Sofie Van Landeghem | Sampo Pyysalo | Tomoko Ohta | Filip Ginter | Yves Van de Peer | Sophia Ananiadou | Tapio Salakoski

Pdf Export Search An improved corpus of disease mentions in PubMed citations
[W12-2411]: Rezarta Islamaj Dogan | Zhiyong Lu

Pdf Export Search New Resources and Perspectives for Biomedical Event Extraction
[W12-2412]: Sampo Pyysalo | Pontus Stenetorp | Tomoko Ohta | Jin-Dong Kim | Sophia Ananiadou

Pdf Export Search Combining Compositionality and Pagerank for the Identification of Semantic Relations between Biomedical Words
[W12-2413]: Thierry Hamon | Christopher Engström | Mounira Manser | Zina Badji | Natalia Grabar | Sergei Silvestrov

Pdf Export Search Domain Adaptation of Coreference Resolution for Radiology Reports
[W12-2414]: Emilia Apostolova | Noriko Tomuro | Pattanasak Mongkolwat | Dina Demner-Fushman

Pdf Export Search What can NLP tell us about BioNLP?
[W12-2415]: Attapol Thamrongrattanarit | Michael Shafir | Michael Crivaro | Bensiin Borukhov | Marie Meteer

Pdf Export Search A Prototype Tool Set to Support Machine-Assisted Annotation
[W12-2416]: Brett South | Shuying Shen | Jianwei Leng | Tyler Forbush | Scott DuVall | Wendy Chapman

Pdf Export Search MedLingMap: A growing resource mapping the Bio-Medical NLP field
[W12-2417]: Marie Meteer | Borukhov Bensiin | Mike Crivaro | Michael Shafir | Attapol Thamrongrattanarit

Pdf Export Search Exploring Label Dependency in Active Learning for Phenotype Mapping
[W12-2418]: Shefali Sharma | Leslie Lange | Jose Luis Ambite | Yigal Arens | Chun-Nan Hsu

Pdf Export Search Evaluating Joint Modeling of Yeast Biology Literature and Protein-Protein Interaction Networks
[W12-2419]: Ramnath Balasubramanyan | Kathryn Rivard | William W. Cohen | Jelena Jakovljevic | John L. Woolford

Pdf Export Search RankPref: Ranking Sentences Describing Relations between Biomedical Entities with an Application
[W12-2420]: Catalina Oana Tudor | K Vijay-Shanker

Pdf Export Search Finding small molecule and protein pairs in scientific literature using a bootstrapping method
[W12-2421]: Ying Yan | Jee-Hyub Kim | Samuel Croset | Dietrich Rebholz-Schuhmann

Pdf Export Search Grading the Quality of Medical Evidence
[W12-2422]: Binod Gyawali | Thamar Solorio | Yassine Benajiba

Pdf Export Search Classifying Gene Sentences in Biomedical Literature by Combining High-Precision Gene Identifiers
[W12-2423]: Sun Kim | Won Kim | Don Comeau | W. John Wilbur

Pdf Export Search Effect of small sample size on text categorization with support vector machines
[W12-2424]: Pawel Matykiewicz | John Pestian

Pdf Export Search PubAnnotation - a persistent and sharable corpus and annotation repository
[W12-2425]: Jin-Dong Kim | Yue Wang

Pdf Export Search Using Natural Language Processing to Extract Drug-Drug Interaction Information from Package Inserts
[W12-2426]: Richard Boyce | Gregory Gardner | Henk Harkema

Pdf Export Search Automatic Approaches for Gene-Drug Interaction Extraction from Biomedical Text: Corpus and Comparative Evaluation
[W12-2427]: Nate Sutton | Laura Wojtulewicz | Neel Mehta | Graciela Gonzalez

Pdf Export Search A Preliminary Work on Symptom Name Recognition from Free-Text Clinical Records of Traditional Chinese Medicine using Conditional Random Fields and Reasonable Features
[W12-2428]: Yaqiang Wang | Yiguang Liu | Zhonghua Yu | Li Chen | Yongguang Jiang

Pdf Export Search Scaling up WSD with Automatically Generated Examples
[W12-2429]: Weiwei Cheng | Judita Preiss | Mark Stevenson

Pdf Export Search Boosting the protein name recognition performance by bootstrapping on selected text
[W12-2430]: Yue Wang | Jin-Dong Kim