Understanding temporal relationships in text from electronic health records can be valuable for many important downstream clinical applications. Since Clinical TempEval 2017, there has been little work on end-to-end systems for temporal relation extraction, with most work focused on the setting where gold standard events and time expressions are given. In this work, we make use of a novel multi-headed attention mechanism on top of a pre-trained transformer encoder to allow the learning process to attend to multiple aspects of the contextualized embeddings. Our system achieves state of the art results on the THYME corpus by a wide margin, in both the in-domain and cross-domain settings.

Consumers of services and products exhibit a wide range of behaviors on social networks when they are dissatisfied. In this paper, we consider three types of cynical expressions negative feelings, specific reasons, and attitude of being right and annotate a corpus of 3189 comments in Spanish on car analysis channels from YouTube. We evaluate both token classification and text classification settings for this problem, and compare performance of different pre-trained models including BETO, SpanBERTa, Multilingual Bert, and RoBERTuito. The results show that models achieve performance above 0.8 F1 for all types of cynical expressions in the text classification setting, but achieve lower performance (around 0.6-0.7 F1) for the harder token classification setting.

The bias-variance tradeoff is the idea that learning methods need to balance model complexity with data size to minimize both under-fitting and over-fitting. Recent empirical work and theoretical analysis with over-parameterized neural networks challenges the classic bias-variance trade-off notion suggesting that no such trade-off holds: as the width of the network grows, bias monotonically decreases while variance initially increases followed by a decrease. In this work, we first provide a variance decomposition-based justification criteria to examine whether large pretrained neural models in a fine-tuning setting are generalizable enough to have low bias and variance. We then perform theoretical and empirical analysis using ensemble methods explicitly designed to decrease variance due to optimization. This results in essentially a two-stage fine-tuning algorithm that first ratchets down bias and variance iteratively, and then uses a selected fixed-bias model to further reduce variance due to optimization by ensembling. We also analyze the nature of variance change with the ensemble size in low- and high-resource classes. Empirical results show that this two-stage method obtains strong results on SuperGLUE tasks and clinical information extraction tasks. Code and settings are available: https://github.com/christa60/bias-var-fine-tuning-plms.git

Geocoding is the task of converting location mentions in text into structured data that encodes the geospatial semantics. We propose a new architecture for geocoding, GeoNorm. GeoNorm first uses information retrieval techniques to generate a list of candidate entries from the geospatial ontology. Then it reranks the candidate entries using a transformer-based neural network that incorporates information from the ontology such as the entry’s population. This generate-and-rerank process is applied twice: first to resolve the less ambiguous countries, states, and counties, and second to resolve the remaining location mentions, using the identified countries, states, and counties as context. Our proposed toponym resolution framework achieves state-of-the-art performance on multiple datasets. Code and models are available at \url{https://github.com/clulab/geonorm}.

Clinical Natural Language Processing has been an increasingly popular research area in the NLP community. With the rise of large language models (LLMs) and their impressive abilities in NLP tasks, it is crucial to pay attention to their clinical applications. Sequence to sequence generative approaches with LLMs have been widely used in recent years. To be a part of the research in clinical NLP with recent advances in the field, we participated in task A of MEDIQA-Chat at ACL-ClinicalNLP Workshop 2023. In this paper, we explain our methods and findings as well as our comments on our results and limitations.

We explore temporal dependency graph (TDG) parsing in the clinical domain. We leverage existing annotations on the THYME dataset to semi-automatically construct a TDG corpus. Then we propose a new natural language inference (NLI) approach to TDG parsing, and evaluate it both on general domain TDGs from wikinews and the newly constructed clinical TDG corpus. We achieve competitive performance on general domain TDGs with a much simpler model than prior work. On the clinical TDGs, our method establishes the first result of TDG parsing on clinical data with 0.79/0.88 micro/macro F1.

This paper presents the systems and approaches of the Gallagher team for the SemEval-2023 Task 5: Clickbait Spoiling. We propose a method to classify the type of spoiler (phrase, passage, multi) and a question-answering method to generate spoilers that satisfy the curiosity caused by clickbait posts. We experiment with the state-of-the-art Seq2Seq model T5. To identify the spoiler types we used a fine-tuned T5 classifier (Subtask 1). A mixture of T5 and Flan-T5 was used to generate the spoilers for clickbait posts (Subtask 2). Our system officially ranks first in generating phrase type spoilers in Subtask 2, and achieves the highest precision score for passage type spoilers in Subtask 1.

This paper presents the systems and approaches of the Arizonans team for the SemEval 2023 Task 9: Multilingual Tweet Intimacy Analysis. We finetune the Multilingual RoBERTa model trained with about 200M tweets, XLM-T. Our final model ranked 9th out of 45 overall, 13th in seen languages, and 8th in unseen languages.

Answering time-sensitive questions from long documents requires temporal reasoning over the times in questions and documents. An important open question is whether large language models can perform such reasoning solely using a provided text document, or whether they can benefit from additional temporal information extracted using other systems. We address this research question by applying existing temporal information extraction systems to construct temporal graphs of events, times, and temporal relations in questions and documents. We then investigate different approaches for fusing these graphs into Transformer models. Experimental results show that our proposed approach for fusing temporal graphs into input text substantially enhances the temporal reasoning capabilities of Transformer models with or without fine-tuning. Additionally, our proposed method outperforms various graph convolution-based approaches and establishes a new state-of-the-art performance on SituatedQA and three splits of TimeQA.

Many areas, such as the biological and healthcare domain, artistic works, and organization names, have nested, overlapping, discontinuous entity mentions that may even be syntactically or semantically ambiguous in practice. Traditional sequence tagging algorithms are unable to recognize these complex mentions because they may violate the assumptions upon which sequence tagging schemes are founded. In this paper, we describe our contribution to SemEval 2022 Task 11 on identifying such complex Named Entities. We have leveraged the ensemble of multiple ELECTRA-based models that were exclusively pretrained on the Bangla language with the performance of ELECTRA-based models pretrained on English to achieve competitive performance on the Track-11. Besides providing a system description, we will also present the outcomes of our experiments on architectural decisions, dataset augmentations, and post-competition findings.

This paper presents the approaches and systems of the UA-KO team for the Korean portion of SemEval-2022 Task 11 on Multilingual Complex Named Entity Recognition.We fine-tuned Korean and multilingual BERT and RoBERTA models, conducted experiments on data augmentation, ensembles, and task-adaptive pretraining. Our final system ranked 8th out of 17 teams with an F1 score of 0.6749 F1.

An existing domain taxonomy for normalizing content is often assumed when discussing approaches to information extraction, yet often in real-world scenarios there is none. When one does exist, as the information needs shift, it must be continually extended. This is a slow and tedious task, and one which does not scale well. Here we propose an interactive tool that allows a taxonomy to be built or extended rapidly and with a human in the loop to control precision. We apply insights from text summarization and information extraction to reduce the search space dramatically, then leverage modern pretrained language models to perform contextualized clustering of the remaining concepts to yield candidate nodes for the user to review. We show this allows a user to consider as many as 200 taxonomy concept candidates an hour, to quickly build or extend a taxonomy to better fit information needs.

Data sharing restrictions are common in NLP, especially in the clinical domain, but there is limited research on adapting models to new domains without access to the original training data, a setting known as source-free domain adaptation. We take algorithms that traditionally assume access to the source-domain training data—active learning, self-training, and data augmentation—and adapt them for source free domain adaptation. Then we systematically compare these different strategies across multiple tasks and domains. We find that active learning yields consistent gains across all SemEval 2021 Task 10 tasks and domains, but though the shared task saw successful self-trained and data augmented models, our systematic comparison finds these strategies to be unreliable for source-free domain adaptation.

This paper presents transformer-based models created for the CLPsych 2022 shared task. Using posts from Reddit users over a period of time, we aim to predict changes in mood from post to post. We test models that preserve timeline information through explicit ordering of posts as well as those that do not order posts but preserve features on the length of time between a user’s posts. We find that a model with temporal information may provide slight benefits over the same model without such information, although a RoBERTa transformer model provides enough information to make similar predictions without custom-encoded time information.

In this paper, we investigate ensemble methods for fine-tuning transformer-based pretrained models for clinical natural language processing tasks, specifically temporal relation extraction from the clinical narrative. Our experimental results on the THYME data show that ensembling as a fine-tuning strategy can further boost model performance over single learners optimized for hyperparameters. Dynamic snapshot ensembling is particularly beneficial as it fine-tunes a wide array of parameters and results in a 2.8% absolute improvement in F1 over the base single learner.

Sequence-to-sequence models are appealing because they allow both encoder and decoder to be shared across many tasks by formulating those tasks as text-to-text problems. Despite recently reported successes of such models, we find that engineering input/output representations for such text-to-text models is challenging. On the Clinical TempEval 2016 relation extraction task, the most natural choice of output representations, where relations are spelled out in simple predicate logic statements, did not lead to good performance. We explore a variety of input/output representations, with the most successful prompting one event at a time, and achieving results competitive with standard pairwise temporal relation extraction systems.

Advances in transfer learning and domain adaptation have raised hopes that once-challenging NLP tasks are ready to be put to use for sophisticated information extraction needs. In this work, we describe an effort to do just that – combining state-of-the-art neural methods for negation detection, document time relation extraction, and aspectual link prediction, with the eventual goal of extracting drug timelines from electronic health record text. We train on the THYME colon cancer corpus and test on both the THYME brain cancer corpus and an internal corpus, and show that performance of the combined systems is unacceptable despite good performance of individual systems. Although domain adaptation shows improvements on each individual system, the model selection problem is a barrier to improving overall pipeline performance.

Many state-of-the-art (SOTA) language models have achieved high accuracy on several multi-hop reasoning problems. However, these approaches tend to not be interpretable because they do not make the intermediate reasoning steps explicit. Moreover, models trained on simpler tasks tend to fail when directly tested on more complex problems. We propose the Explainable multi-hop Verbal Reasoner (EVR) to solve these limitations by (a) decomposing multi-hop reasoning problems into several simple ones, and (b) using natural language to guide the intermediate reasoning hops. We implement EVR by extending the classic reasoning paradigm General Problem Solver (GPS) with a SOTA generative language model to generate subgoals and perform inference in natural language at each reasoning step. Evaluation of EVR on the RuleTaker synthetic question answering (QA) dataset shows that EVR achieves SOTA performance while being able to generate all reasoning steps in natural language. Furthermore, EVR generalizes better than other strong methods when trained on simpler tasks or less training data (up to 35.7% and 7.7% absolute improvement respectively).

Multi-hop reasoning requires aggregation and inference from multiple facts. To retrieve such facts, we propose a simple approach that retrieves and reranks set of evidence facts jointly. Our approach first generates unsupervised clusters of sentences as candidate evidence by accounting links between sentences and coverage with the given query. Then, a RoBERTa-based reranker is trained to bring the most representative evidence cluster to the top. We specifically emphasize on the importance of retrieving evidence jointly by showing several comparative analyses to other methods that retrieve and rerank evidence sentences individually. First, we introduce several attention- and embedding-based analyses, which indicate that jointly retrieving and reranking approaches can learn compositional knowledge required for multi-hop reasoning. Second, our experiments show that jointly retrieving candidate evidence leads to substantially higher evidence retrieval performance when fed to the same supervised reranker. In particular, our joint retrieval and then reranking approach achieves new state-of-the-art evidence retrieval performance on two multi-hop question answering (QA) datasets: 30.5 Recall@2 on QASC, and 67.6% F1 on MultiRC. When the evidence text from our joint retrieval approach is fed to a RoBERTa-based answer selection classifier, we achieve new state-of-the-art QA performance on MultiRC and second best result on QASC.

Pretrained transformer-based language models achieve state-of-the-art performance in many NLP tasks, but it is an open question whether the knowledge acquired by the models during pretraining resembles the linguistic knowledge of humans. We present both humans and pretrained transformers with descriptions of events, and measure their preference for telic interpretations (the event has a natural endpoint) or atelic interpretations (the event does not have a natural endpoint). To measure these preferences and determine what factors influence them, we design an English test and a novel-word test that include a variety of linguistic cues (noun phrase quantity, resultative structure, contextual information, temporal units) that bias toward certain interpretations. We find that humans’ choice of telicity interpretation is reliably influenced by theoretically-motivated cues, transformer models (BERT and RoBERTa) are influenced by some (though not all) of the cues, and transformer models often rely more heavily on temporal units than humans do.

Concept normalization, the task of linking textual mentions of concepts to concepts in an ontology, is critical for mining and analyzing biomedical texts. We propose a vector-space model for concept normalization, where mentions and concepts are encoded via transformer networks that are trained via a triplet objective with online hard triplet mining. The transformer networks refine existing pre-trained models, and the online triplet mining makes training efficient even with hundreds of thousands of concepts by sampling training triples within each mini-batch. We introduce a variety of strategies for searching with the trained vector-space model, including approaches that incorporate domain-specific synonyms at search time with no model retraining. Across five datasets, our models that are trained only once on their corresponding ontologies are within 3 points of state-of-the-art models that are retrained for each new domain. Our models can also be trained for each domain, achieving new state-of-the-art on multiple datasets.

Transformer-based neural language models have led to breakthroughs for a variety of natural language processing (NLP) tasks. However, most models are pretrained on general domain data. We propose a methodology to produce a model focused on the clinical domain: continued pretraining of a model with a broad representation of biomedical terminology (PubMedBERT) on a clinical corpus along with a novel entity-centric masking strategy to infuse domain knowledge in the learning process. We show that such a model achieves superior results on clinical extraction tasks by comparing our entity-centric masking strategy with classic random masking on three clinical NLP tasks: cross-domain negation detection, document time relation (DocTimeRel) classification, and temporal relation extraction. We also evaluate our models on the PubMedQA dataset to measure the models’ performance on a non-entity-centric task in the biomedical domain. The language addressed in this work is English.

While annotating normalized times in food security documents, we found that the semantically compositional annotation for time normalization (SCATE) scheme required several near-duplicate annotations to get the correct semantics for expressions like Nov. 7th to 11th 2021. To reduce this problem, we explored replacing SCATE’s Sub-Interval property with a Super-Interval property, that is, making the smallest units (e.g., 7th and 11th) rather than the largest units (e.g., 2021) the heads of the intersection chains. To ensure that the semantics of annotated time intervals remained unaltered despite our changes to the syntax of the annotation scheme, we applied several different techniques to validate our changes. These validation techniques detected and allowed us to resolve several important bugs in our automated translation from Sub-Interval to Super-Interval syntax.

This paper presents the Source-Free Domain Adaptation shared task held within SemEval-2021. The aim of the task was to explore adaptation of machine-learning models in the face of data sharing constraints. Specifically, we consider the scenario where annotations exist for a domain but cannot be shared. Instead, participants are provided with models trained on that (source) data. Participants also receive some labeled data from a new (development) domain on which to explore domain adaptation algorithms. Participants are then tested on data representing a new (target) domain. We explored this scenario with two different semantic tasks: negation detection (a text classification task) and time expression recognition (a sequence tagging task).

This paper describes our systems for negation detection and time expression recognition in SemEval 2021 Task 10, Source-Free Domain Adaptation for Semantic Processing. We show that self-training, active learning and data augmentation techniques can improve the generalization ability of the model on the unlabeled target domain data without accessing source domain data. We also perform detailed ablation studies and error analyses for our time expression recognition systems to identify the source of the performance improvement and give constructive feedback on the temporal normalization annotation guidelines.

On Wikipedia, an online crowdsourced encyclopedia, volunteers enforce the encyclopedia’s editorial policies. Wikipedia’s policy on maintaining a neutral point of view has inspired recent research on bias detection, including “weasel words” and “hedges”. Yet to date, little work has been done on identifying “puffery,” phrases that are overly positive without a verifiable source. We demonstrate that collecting training data for this task requires some care, and construct a dataset by combining Wikipedia editorial annotations and information retrieval techniques. We compare several approaches to predicting puffery, and achieve 0.963 f1 score by incorporating citation features into a RoBERTa model. Finally, we demonstrate how to integrate our model with Wikipedia’s public infrastructure to give back to the Wikipedia editor community.

Evidence retrieval is a critical stage of question answering (QA), necessary not only to improve performance, but also to explain the decisions of the QA method. We introduce a simple, fast, and unsupervised iterative evidence retrieval method, which relies on three ideas: (a) an unsupervised alignment approach to soft-align questions and answers with justification sentences using only GloVe embeddings, (b) an iterative process that reformulates queries focusing on terms that are not covered by existing justifications, which (c) stops when the terms in the given question and candidate answers are covered by the retrieved justifications. Despite its simplicity, our approach outperforms all the previous methods (including supervised methods) on the evidence selection task on two datasets: MultiRC and QASC. When these evidence sentences are fed into a RoBERTa answer classification component, we achieve state-of-the-art QA performance on these two datasets.

Large pretrained language models like BERT, after fine-tuning to a downstream task, have achieved high performance on a variety of NLP problems. Yet explaining their decisions is difficult despite recent work probing their internal representations. We propose a procedure and analysis methods that take a hypothesis of how a transformer-based model might encode a linguistic phenomenon, and test the validity of that hypothesis based on a comparison between knowledge-related downstream tasks with downstream control tasks, and measurement of cross-dataset consistency. We apply this methodology to test BERT and RoBERTa on a hypothesis that some attention heads will consistently attend from a word in negation scope to the negation cue. We find that after fine-tuning BERT and RoBERTa on a negation scope task, the average attention head improves its sensitivity to negation and its attention consistency across negation datasets compared to the pre-trained models. However, only the base models (not the large models) improve compared to a control task, indicating there is evidence for a shallow encoding of negation only in the base models.

Concept normalization, the task of linking textual mentions of concepts to concepts in an ontology, is challenging because ontologies are large. In most cases, annotated datasets cover only a small sample of the concepts, yet concept normalizers are expected to predict all concepts in the ontology. In this paper, we propose an architecture consisting of a candidate generator and a list-wise ranker based on BERT. The ranker considers pairings of concept mentions and candidate concepts, allowing it to make predictions for any concept, not just those seen during training. We further enhance this list-wise approach with a semantic type regularizer that allows the model to incorporate semantic type information from the ontology during training. Our proposed concept normalization framework achieves state-of-the-art performance on multiple datasets.

Recently BERT has achieved a state-of-the-art performance in temporal relation extraction from clinical Electronic Medical Records text. However, the current approach is inefficient as it requires multiple passes through each input sequence. We extend a recently-proposed one-pass model for relation classification to a one-pass model for relation extraction. We augment this framework by introducing global embeddings to help with long-distance relation inference, and by multi-task learning to increase model performance and generalizability. Our proposed model produces results on par with the state-of-the-art in temporal relation extraction on the THYME corpus and is much “greener” in computational cost.

We present refinements over existing temporal relation annotations in the Electronic Medical Record clinical narrative. We refined the THYME corpus annotations to more faithfully represent nuanced temporality and nuanced temporal-coreferential relations. The main contributions are in re-defining CONTAINS and OVERLAP relations into CONTAINS, CONTAINS-SUBEVENT, OVERLAP and NOTED-ON. We demonstrate that these refinements lead to substantial gains in learnability for state-of-the-art transformer models as compared to previously reported results on the original THYME corpus. We thus establish a baseline for the automatic extraction of these refined temporal relations. Although our study is done on clinical narrative, we believe it addresses far-reaching challenges that are corpus- and domain- agnostic.

In undergraduate theses, a good methodology section should describe the series of steps that were followed in performing the research. To assist students in this task, we develop machine-learning models and an app that uses them to provide feedback while students write. We construct an annotated corpus that identifies sentences representing methodological steps and labels when a methodology contains a logical sequence of such steps. We train machine-learning models based on language modeling and lexical features that can identify sentences representing methodological steps with 0.939 f-measure, and identify methodology sections containing a logical sequence of steps with an accuracy of 87%. We incorporate these models into a Microsoft Office Add-in, and show that students who improved their methodologies according to the model feedback received better grades on their methodologies.

In this paper, we describe our approaches and systems for the SemEval-2020 Task 11 on propaganda technique detection. We fine-tuned BERT and RoBERTa pre-trained models then merged them with an average ensemble. We conducted several experiments for input representations dealing with long texts and preserving context as well as for the imbalanced class problem. Our system ranked 20th out of 36 teams with 0.398 F1 in the SI task and 14th out of 31 teams with 0.556 F1 in the TC task.

Much previous work on geoparsing has focused on identifying and resolving individual toponyms in text like Adrano, S.Maria di Licodia or Catania. However, geographical locations occur not only as individual toponyms, but also as compositions of reference geolocations joined and modified by connectives, e.g., “. . . between the towns of Adrano and S.Maria di Licodia, 32 kilometres northwest of Catania”. Ideally, a geoparser should be able to take such text, and the geographical shapes of the toponyms referenced within it, and parse these into a geographical shape, formed by a set of coordinates, that represents the location described. But creating a dataset for this complex geoparsing task is difficult and, if done manually, would require a huge amount of effort to annotate the geographical shapes of not only the geolocation described but also the reference toponyms. We present an approach that automates most of the process by combining Wikipedia and OpenStreetMap. As a result, we have gathered a collection of 360,187 uncurated complex geolocation descriptions, from which we have manually curated 1,000 examples intended to be used as a test set. To accompany the data, we define a new geoparsing evaluation framework along with a scoring methodology and a set of baselines.

Incivility is a problem on social media, and it comes in many forms (name-calling, vulgarity, threats, etc.) and domains (microblog posts, online news comments, Wikipedia edits, etc.). Training machine learning models to detect such incivility must handle the multi-label and multi-domain nature of the problem. We present a BERT-based model for incivility detection and propose several approaches for training it for multi-label and multi-domain datasets. We find that individual binary classifiers outperform a joint multi-label classifier, and that simply combining multiple domains of training data outperforms other recently-proposed fine tuning strategies. We also establish new state-of-the-art performance on several incivility detection datasets.

Recent studies have shown that pre-trained contextual word embeddings, which assign the same word different vectors in different contexts, improve performance in many tasks. But while contextual embeddings can also be trained at the character level, the effectiveness of such embeddings has not been studied. We derive character-level contextual embeddings from Flair (Akbik et al., 2018), and apply them to a time normalization task, yielding major performance improvements over the previous state-of-the-art: 51% error reduction in news and 33% in clinical notes. We analyze the sources of these improvements, and find that pre-trained contextual character embeddings are more robust to term variations, infrequent terms, and cross-domain changes. We also quantify the size of context that pre-trained contextual character embeddings take advantage of, and show that such embeddings capture features like part-of-speech and capitalization.

Incivility in public discourse has been a major concern in recent times as it can affect the quality and tenacity of the discourse negatively. In this paper, we present neural models that can learn to detect name-calling and vulgarity from a newspaper comment section. We show that in contrast to prior work on detecting toxic language, fine-grained incivilities like namecalling cannot be accurately detected by simple models like logistic regression. We apply the models trained on the newspaper comments data to detect uncivil comments in a Russian troll dataset, and find that despite the change of domain, the model makes accurate predictions.

We present the Named Entity Recognition (NER) and disambiguation model used by the University of Arizona team (UArizona) for the SemEval 2019 task 12. We achieved fourth place on tasks 1 and 3. We implemented a deep-affix based LSTM-CRF NER model for task 1, which utilizes only character, word, pre- fix and suffix information for the identification of geolocation entities. Despite using just the training data provided by task organizers and not using any lexicon features, we achieved 78.85% strict micro F-score on task 1. We used the unsupervised population heuristics for task 3 and achieved 52.99% strict micro-F1 score in this task.

Classic methods for clinical temporal relation extraction focus on relational candidates within a sentence. On the other hand, break-through Bidirectional Encoder Representations from Transformers (BERT) are trained on large quantities of arbitrary spans of contiguous text instead of sentences. In this study, we aim to build a sentence-agnostic framework for the task of CONTAINS temporal relation extraction. We establish a new state-of-the-art result for the task, 0.684F for in-domain (0.055-point improvement) and 0.565F for cross-domain (0.018-point improvement), by fine-tuning BERT and pre-training domain-specific BERT models on sentence-agnostic temporal relation instances with WordPiece-compatible encodings, and augmenting the labeled data with automatically generated “silver” instances.

The National Environmental Policy Act (NEPA) provides a trove of data on how environmental policy decisions have been made in the United States over the last 50 years. Unfortunately, there is no central database for this information and it is too voluminous to assess manually. We describe our efforts to enable systematic research over US environmental policy by extracting and organizing metadata from the text of NEPA documents. Our contributions include collecting more than 40,000 NEPA-related documents, and evaluating rule-based baselines that establish the difficulty of three important tasks: identifying lead agencies, aligning document versions, and detecting reused text.

We propose an unsupervised strategy for the selection of justification sentences for multi-hop question answering (QA) that (a) maximizes the relevance of the selected sentences, (b) minimizes the overlap between the selected facts, and (c) maximizes the coverage of both question and answer. This unsupervised sentence selection can be coupled with any supervised QA model. We show that the sentences selected by our method improve the performance of a state-of-the-art supervised QA model on two multi-hop QA datasets: AI2’s Reasoning Challenge (ARC) and Multi-Sentence Reading Comprehension (MultiRC). We obtain new state-of-the-art performance on both datasets among systems that do not use external resources for training the QA system: 56.82% F1 on ARC (41.24% on Challenge and 64.49% on Easy) and 26.1% EM0 on MultiRC. Our justification sentences have higher quality than the justifications selected by a strong information retrieval baseline, e.g., by 5.4% F1 in MultiRC. We also show that our unsupervised selection of justification sentences is more stable across domains than a state-of-the-art supervised sentence selection method.

We propose a simple, fast, and mostly-unsupervised approach for non-factoid question answering (QA) called Alignment over Heterogeneous Embeddings (AHE). AHE simply aligns each word in the question and candidate answer with the most similar word in the retrieved supporting paragraph, and weighs each alignment score with the inverse document frequency of the corresponding question/answer term. AHE’s similarity function operates over embeddings that model the underlying text at different levels of abstraction: character (FLAIR), word (BERT and GloVe), and sentence (InferSent), where the latter is the only supervised component in the proposed approach. Despite its simplicity and lack of supervision, AHE obtains a new state-of-the-art performance on the “Easy” partition of the AI2 Reasoning Challenge (ARC) dataset (64.6% accuracy), top-two performance on the “Challenge” partition of ARC (34.1%), and top-three performance on the WikiQA dataset (74.08% MRR), outperforming many other complex, supervised approaches. Our error analysis indicates that alignments over character, word, and sentence embeddings capture substantially different semantic information. We exploit this with a simple meta-classifier that learns how much to trust the predictions over each representation, which further improves the performance of unsupervised AHE.

Building causal models of complicated phenomena such as food insecurity is currently a slow and labor-intensive manual process. In this paper, we introduce an approach that builds executable probabilistic models from raw, free text. The proposed approach is implemented through three systems: Eidos, INDRA, and Delphi. Eidos is an open-domain machine reading system designed to extract causal relations from natural language. It is rule-based, allowing for rapid domain transfer, customizability, and interpretability. INDRA aggregates multiple sources of causal information and performs assembly to create a coherent knowledge base and assess its reliability. This assembled knowledge serves as the starting point for modeling. Delphi is a modeling framework that assembles quantified causal fragments and their contexts into executable probabilistic models that respect the semantics of the original text, and can be used to support decision making.

Neural network models are oftentimes restricted by limited labeled instances and resort to advanced architectures and features for cutting edge performance. We propose to build a recurrent neural network with multiple semantically heterogeneous embeddings within a self-training framework. Our framework makes use of labeled, unlabeled, and social media data, operates on basic features, and is scalable and generalizable. With this method, we establish the state-of-the-art result for both in- and cross-domain for a clinical temporal relation extraction task.

This paper presents the outcomes of the Parsing Time Normalization shared task held within SemEval-2018. The aim of the task is to parse time expressions into the compositional semantic graphs of the Semantically Compositional Annotation of Time Expressions (SCATE) schema, which allows the representation of a wider variety of time expressions than previous approaches. Two tracks were included, one to evaluate the parsing of individual components of the produced graphs, in a classic information extraction way, and another one to evaluate the quality of the time intervals resulting from the interpretation of those graphs. Though 40 participants registered for the task, only one team submitted output, achieving 0.55 F1 in Track 1 (parsing) and 0.70 F1 in Track 2 (intervals).

We propose a practical model for named entity recognition (NER) that combines word and character-level information with a specific learned representation of the prefixes and suffixes of the word. We apply this approach to multilingual and multi-domain NER and show that it achieves state of the art results on the CoNLL 2002 Spanish and Dutch and CoNLL 2003 German NER datasets, consistently achieving 1.5-2.3 percent over the state of the art without relying on any dictionary features. Additionally, we show improvement on SemEval 2013 task 9.1 DrugNER, achieving state of the art results on the MedLine dataset and the second best results overall (-1.3% from state of the art). We also establish a new benchmark on the I2B2 2010 Clinical NER dataset with 84.70 F-score.

This paper presents the first model for time normalization trained on the SCATE corpus. In the SCATE schema, time expressions are annotated as a semantic composition of time entities. This novel schema favors machine learning approaches, as it can be viewed as a semantic parsing task. In this work, we propose a character level multi-output neural network that outperforms previous state-of-the-art built on the TimeML schema. To compare predictions of systems that follow both SCATE and TimeML, we present a new scoring metric for time intervals. We also apply this new metric to carry out a comparative analysis of the annotations of both schemes in the same corpus.

Named Entity Recognition (NER) is a key component in NLP systems for question answering, information retrieval, relation extraction, etc. NER systems have been studied and developed widely for decades, but accurate systems using deep neural networks (NN) have only been introduced in the last few years. We present a comprehensive survey of deep neural network architectures for NER, and contrast them with previous approaches to NER based on feature engineering and other supervised or semi-supervised learning algorithms. Our results highlight the improvements achieved by neural networks, and show how incorporating some of the lessons learned from past work on feature-based NER systems can yield further improvements.

Implicit semantic role labeling (iSRL) is the task of predicting the semantic roles of a predicate that do not appear as explicit arguments, but rather regard common sense knowledge or are mentioned earlier in the discourse. We introduce an approach to iSRL based on a predictive recurrent neural semantic frame model (PRNSFM) that uses a large unannotated corpus to learn the probability of a sequence of semantic arguments given a predicate. We leverage the sequence probabilities predicted by the PRNSFM to estimate selectional preferences for predicates and their arguments. On the NomBank iSRL test set, our approach improves state-of-the-art performance on implicit semantic role labeling with less reliance than prior work on manually constructed language resources.

We experiment with neural architectures for temporal relation extraction and establish a new state-of-the-art for several scenarios. We find that neural models with only tokens as input outperform state-of-the-art hand-engineered feature-based models, that convolutional neural networks outperform LSTM models, and that encoding relation arguments with XML tags outperforms a traditional position-based encoding.

Clinical TempEval 2017 aimed to answer the question: how well do systems trained on annotated timelines for one medical condition (colon cancer) perform in predicting timelines on another medical condition (brain cancer)? Nine sub-tasks were included, covering problems in time expression identification, event expression identification and temporal relation identification. Participant systems were evaluated on clinical and pathology notes from Mayo Clinic cancer patients, annotated with an extension of TimeML for the clinical domain. 11 teams participated in the tasks, with the best systems achieving F1 scores above 0.55 for time expressions, above 0.70 for event expressions, and above 0.40 for temporal relations. Most tasks observed about a 20 point drop over Clinical TempEval 2016, where systems were trained and evaluated on the same domain (colon cancer).

Detecting negated concepts in clinical texts is an important part of NLP information extraction systems. However, generalizability of negation systems is lacking, as cross-domain experiments suffer dramatic performance losses. We examine the performance of multiple unsupervised domain adaptation algorithms on clinical negation detection, finding only modest gains that fall well short of in-domain performance.

Token sequences are often used as the input for Convolutional Neural Networks (CNNs) in natural language processing. However, they might not be an ideal representation for time expressions, which are long, highly varied, and semantically complex. We describe a method for representing time expressions with single pseudo-tokens for CNNs. With this method, we establish a new state-of-the-art result for a clinical temporal relation extraction task.

We present a successful collaboration of word embeddings and co-training to tackle in the most difficult test case of semantic role labeling: predicting out-of-domain and unseen semantic frames. Despite the fact that co-training is a successful traditional semi-supervised method, its application in SRL is very limited especially when a huge amount of labeled data is available. In this work, co-training is used together with word embeddings to improve the performance of a system trained on a large training dataset. We also introduce a semantic role labeling system with a simple learning architecture and effective inference that is easily adaptable to semi-supervised settings with new training data and/or new features. On the out-of-domain testing set of the standard benchmark CoNLL 2009 data our simple approach achieves high performance and improves state-of-the-art results.

Health support forums have become a rich source of data that can be used to improve health care outcomes. A user profile, including information such as age and gender, can support targeted analysis of forum data. But users might not always disclose their age and gender. It is desirable then to be able to automatically extract this information from users’ content. However, to the best of our knowledge there is no such resource for author profiling of health forum data. Here we present a large corpus, with close to 85,000 users, for profiling and also outline our approach and benchmark results to automatically detect a user’s age and gender from their forum posts. We use a mix of features from a user’s text as well as forum specific features to obtain accuracy well above the baseline, thus showing that both our dataset and our method are useful and valid.

We present a new annotation scheme for normalizing time expressions, such as “three days ago”, to computer-readable forms, such as 2016-03-07. The annotation scheme addresses several weaknesses of the existing TimeML standard, allowing the representation of time expressions that align to more than one calendar unit (e.g., “the past three summers”), that are defined relative to events (e.g., “three weeks postoperative”), and that are unions or intersections of smaller time expressions (e.g., “Tuesdays and Thursdays”). It achieves this by modeling time expression interpretation as the semantic composition of temporal operators like UNION, NEXT, and AFTER. We have applied the annotation scheme to 34 documents so far, producing 1104 annotations, and achieving inter-annotator agreement of 0.821.

ClearTK adds machine learning functionality to the UIMA framework, providing wrappers to popular machine learning libraries, a rich feature extraction library that works across different classifiers, and utilities for applying and evaluating machine learning models. Since its inception in 2008, ClearTK has evolved in response to feedback from developers and the community. This evolution has followed a number of important design principles including: conceptually simple annotator interfaces, readable pipeline descriptions, minimal collection readers, type system agnostic code, modules organized for ease of import, and assisting user comprehension of the complex UIMA framework.

This article discusses the requirements of a formal specification for the annotation of temporal information in clinical narratives. We discuss the implementation and extension of ISO-TimeML for annotating a corpus of clinical notes, known as the THYME corpus. To reflect the information task and the heavily inference-based reasoning demands in the domain, a new annotation guideline has been developed, “the THYME Guidelines to ISO-TimeML (THYME-TimeML)”. To clarify what relations merit annotation, we distinguish between linguistically-derived and inferentially-derived temporal orderings in the text. We also apply a top performing TempEval 2013 system against this new resource to measure the difficulty of adapting systems to the clinical domain. The corpus is available to the community and has been proposed for use in a SemEval 2015 task.

We present a simple, easy-to-replicate monolingual aligner that demonstrates state-of-the-art performance while relying on almost no supervision and a very small number of external resources. Based on the hypothesis that words with similar meanings represent potential pairs for alignment if located in similar contexts, we propose a system that operates by finding such pairs. In two intrinsic evaluations on alignment test data, our system achieves F1 scores of 88–92%, demonstrating 1–3% absolute improvement over the previous best system. Moreover, in two extrinsic evaluations our aligner outperforms existing aligners, and even a naive application of the aligner approaches state-of-the-art performance in each extrinsic task.

The past 10 years of event ordering research has focused on learning partial orderings over document events and time expressions. The most popular corpus, the TimeBank, contains a small subset of the possible ordering graph. Many evaluations follow suit by only testing certain pairs of events (e.g., only main verbs of neighboring sentences). This has led most research to focus on specific learners for partial labelings. This paper attempts to nudge the discussion from identifying some relations to all relations. We present new experiments on strongly connected event graphs that contain ∼10 times more relations per document than the TimeBank. We also describe a shift away from the single learner to a sieve-based architecture that naturally blends multiple learners into a precision-ranked cascade of sieves. Each sieve adds labels to the event graph one at a time, and earlier sieves inform later ones through transitive closure. This paper thus describes innovations in both approach and task. We experiment on the densest event graphs to date and show a 14% gain over state-of-the-art.

We present an approach to annotating timelines in stories where events are linked together by temporal relations into a temporal dependency tree. This approach avoids the disconnected timeline problems of prior work, and results in timelines that are more suitable for temporal reasoning. We show that annotating timelines as temporal dependency trees is possible with high levels of inter-annotator agreement - Krippendorff's Alpha of 0.822 on selecting event pairs, and of 0.700 on selecting temporal relation labels - even with the moderately sized relation set of BEFORE, AFTER, INCLUDES, IS-INCLUDED, IDENTITY and OVERLAP. We also compare several annotation schemes for identifying story events, and show that higher inter-annotator agreement can be reached by focusing on only the events that are essential to forming the timeline, skipping words in negated contexts, modal contexts and quoted speech.

While recent corpus annotation efforts cover a wide variety of semantic structures, work on temporal and causal relations is still in its early stages. Annotation efforts have typically considered either temporal relations or causal relations, but not both, and no corpora currently exist that allow the relation between temporals and causals to be examined empirically. We have annotated a corpus of 1000 event pairs for both temporal and causal relations, focusing on a relatively frequent construction in which the events are conjoined by the word “and”. Temporal relations were annotated using an extension of the BEFORE and AFTER scheme used in the TempEval competition, and causal relations were annotated using a scheme based on connective phrases like “and as a result”. The annotators achieved 81.2% agreement on temporal relations and 77.8% agreement on causal relations. Analysis of the resulting corpus revealed some interesting findings, for example, that over 30% of CAUSAL relations do not have an underlying BEFORE relation. The corpus was also explored using machine learning methods, and while model performance exceeded all baselines, the results suggested that simple grammatical cues may be insufficient for identifying the more difficult temporal and causal relations.